Stem-loop ppe-MIR395b

Accession

MI0026104

Description

Prunus persica ppe-MIR395b precursor miRNA

Literature search

3 open access papers mention ppe-MIR395b
(13 sentences)

Sequence

aucagauagccccuagaGUUCCCUCAAACACUUCAUUggagauuauuaugggcauuaucuuaauuaugccucucucucucuacuuucuaCUGAAGUGUUUGGGGGGACCCuuggagucauuugau
(((((((.((.((.((.((((((((((((((((((.((((((.......((((((..........))))))............)))))).)))))))))))))))))).)).)).)).)))))))

Structure

       a  c  u  a                  U      -----uuauuau      uauc 
aucagau gc cc ag GUUCCCUCAAACACUUCA Uggaga            gggcau    u
||||||| || || || |||||||||||||||||| ||||||            ||||||     
uaguuua ug gg uC CAGGGGGGUUUGUGAAGU aucuuu            uccgua    u
       c  a  u  C                  C      caucucucucuc      uuaa 

Annotation confidence Not enough data

Genome context

chrG1: 27773971-27774095 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppe-MIR395b

Mature ppe-miR395b-5p

• Accession: MIMAT0031479
• Description: Prunus persica ppe-miR395b-5p mature miRNA
• Sequence: 18 - GUUCCCUCAAACACUUCAUU - 37
• Evidence: experimental ; Illumina [1]

Mature ppe-miR395b-3p

• Accession: MIMAT0031480
• Description: Prunus persica ppe-miR395b-3p mature miRNA
• Sequence: 90 - CUGAAGUGUUUGGGGGGACCC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149