miRBase entry: ppe-MIR169g

Stem-loop ppe-MIR169g


Accession
MI0026088
Description
Prunus persica ppe-MIR169g precursor miRNA

Literature search
7 open access papers mention ppe-MIR169g
(21 sentences)

Sequence

gacaggaagggaggccuuacaugaaggaaagagucuuguuuggUAGCCAAGGAUGACUUGCCUGCcuccaguuucaugagcuuuuaccuauaauuaauuaaucugcagcuucuucacauuaauauugugccaaauuccuguuaggcugccaggcagucaccuuggcuaaucucgcaggcucuucucuuucaugcuaggccucuucuuccuuc
...((((((((((((((..(((((((((((((((((.((..(((((((((((.(((((.(((((.....(((((...)))))......................(((((((...((((.......)))).............))))))))))))))))))))))))).)))..)))))))))).)))))))))..))))))).)))))))..

Structure
gac       -       ua         -        u  uu   -        A     U     Ccuccaguuucaugagcuuuuaccuauaauuaauuaaucu       ----------cuu    uu 
   aggaagg gaggccu  caugaagga aagagucu gu  ggU AGCCAAGG UGACU GCCUG                                        gcagcuu             caca  a
   ||||||| |||||||  ||||||||| |||||||| ||  ||| |||||||| ||||| |||||                                        |||||||             ||||  a
   uccuucu cuccgga  guacuuucu uucucgga cg  cua ucgguucc acuga cggac                                        cgucgga             gugu  u
-cu       u       uc         c        -  cu   a        -     -     ----------------------------------------       uuguccuuaaacc    ua 


Annotation confidence Not enough data
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Genome context
chrG3: 27020690-27020901 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR169g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR169g

Accession MIMAT0031460
Description Prunus persica ppe-miR169g mature miRNA
Sequence 44 - UAGCCAAGGAUGACUUGCCUGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149