miRBase entry: prd-mir-7949

Stem-loop prd-mir-7949


Accession
MI0025705
Description
Panagrellus redivivus prd-mir-7949 precursor miRNA


Sequence

CGAGUCUGACCGGGCGUAAGCUuguaaaguaauagUUUGCGACCGGAAUGAUUCUU
.(((((...((((.((((((((...........)))))))).))))...)))))..

Structure
-C     UGA    G        ugua 
  GAGUC   CCGG CGUAAGCU    a
  |||||   |||| ||||||||    a
  CUUAG   GGCC GCGUUUga    g
UU     UAA    A        uaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB455157.1: 45984-46039 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from prd-mir-7949
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7949-5p

Accession MIMAT0030768
Description Panagrellus redivivus prd-miR-7949-5p mature miRNA
Sequence 1 - CGAGUCUGACCGGGCGUAAGCU - 22
Evidence experimental
Illumina [1]

Mature prd-miR-7949-3p

Accession MIMAT0030769
Description Panagrellus redivivus prd-miR-7949-3p mature miRNA
Sequence 36 - UUUGCGACCGGAAUGAUUCUU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295