miRBase entry: prd-mir-7946

Stem-loop prd-mir-7946


Accession
MI0025697
Description
Panagrellus redivivus prd-mir-7946 precursor miRNA


Sequence

GUGAGUUUCUUUUACAUCAAGaaguuguggcuucUCGAUAUGAAAGUAAGCUUACAG
((((((((((((((.(((.((((((....)))))).))).)))))).))))))))..

Structure
--        -      C   A      u 
  GUGAGUUU CUUUUA AUC AGaagu g
  |||||||| |||||| ||| ||||||  
  CAUUCGAA GAAAGU UAG Ucuucg u
GA        U      A   C      g 


Annotation confidence Not enough data
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Genome context
KB455447.1: 279668-279724 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7946
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7946-5p

Accession MIMAT0030752
Description Panagrellus redivivus prd-miR-7946-5p mature miRNA
Sequence 1 - GUGAGUUUCUUUUACAUCAAG - 21
Evidence experimental
Illumina [1]

Mature prd-miR-7946-3p

Accession MIMAT0030753
Description Panagrellus redivivus prd-miR-7946-3p mature miRNA
Sequence 35 - UCGAUAUGAAAGUAAGCUUACAG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295