miRBase entry: prd-mir-7944

Stem-loop prd-mir-7944


Accession
MI0025695
Description
Panagrellus redivivus prd-mir-7944 precursor miRNA


Sequence

AACGCACUUGAAUCAUCGUUAGCauaucugugaauugCAAACGUAAUUAAGUGCGCGGAG
..(((((((((.....((((.(((..((...))..))).))))...))))))))).....

Structure
---AA         AUCAU    A   ua  u 
     CGCACUUGA     CGUU GCa  uc  
     |||||||||     |||| |||  || g
     GCGUGAAUU     GCAA Cgu  ag  
GAGGC         --AAU    A   ua  u 


Annotation confidence Not enough data
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Genome context
KB455323.1: 202183-202242 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from prd-mir-7944
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7944-5p

Accession MIMAT0030748
Description Panagrellus redivivus prd-miR-7944-5p mature miRNA
Sequence 1 - AACGCACUUGAAUCAUCGUUAGC - 23
Evidence experimental
Illumina [1]

Mature prd-miR-7944-3p

Accession MIMAT0030749
Description Panagrellus redivivus prd-miR-7944-3p mature miRNA
Sequence 38 - CAAACGUAAUUAAGUGCGCGGAG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295