miRBase entry: prd-mir-1

Stem-loop prd-mir-1


Accession
MI0025681
Description
Panagrellus redivivus prd-mir-1 precursor miRNA


Sequence

ACGUGCUUCUUUGCAAGACCAUAgugaauacuguuuaUGGAAUGUAAAGAAGUAUGUAG
(((((((((((((((...((((((..........))))))..)))))))))))))))..

Structure
--               AGA      ugaa 
  ACGUGCUUCUUUGCA   CCAUAg    u
  |||||||||||||||   ||||||     
  UGUAUGAAGAAAUGU   GGUauu    a
GA               -AA      uguc 


Annotation confidence Not enough data
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Genome context
KB455090.1: 26488-26546 [+]

Database links

Mature prd-miR-1-5p

Accession MIMAT0030720
Description Panagrellus redivivus prd-miR-1-5p mature miRNA
Sequence 1 - ACGUGCUUCUUUGCAAGACCAUA - 23
Evidence experimental
Illumina [1]

Mature prd-miR-1-3p

Accession MIMAT0030721
Description Panagrellus redivivus prd-miR-1-3p mature miRNA
Sequence 38 - UGGAAUGUAAAGAAGUAUGUAG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295