miRBase entry: prd-mir-7930

Stem-loop prd-mir-7930


Accession
MI0025675
Description
Panagrellus redivivus prd-mir-7930 precursor miRNA


Sequence

CUACUAUGCCUUCACCCUUUUGCGuuaguguaaaaccgcAAAGGAUGUUGGUAGAGUAUUG
.((((.((((..((.(((((.(((...((.....)))))))))).))..)))).))))...

Structure
--C    A    UU  C     U   uua  g 
   UACU UGCC  CA CCUUU GCG   gu u
   |||| ||||  || ||||| |||   || a
   AUGA AUGG  GU GGAAA cgc   ca a
GUU    G    UU  A     -   ---  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB455551.1: 21041-21101 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7930
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7930-5p

Accession MIMAT0030708
Description Panagrellus redivivus prd-miR-7930-5p mature miRNA
Sequence 1 - CUACUAUGCCUUCACCCUUUUGCG - 24
Evidence experimental
Illumina [1]

Mature prd-miR-7930-3p

Accession MIMAT0030709
Description Panagrellus redivivus prd-miR-7930-3p mature miRNA
Sequence 40 - AAAGGAUGUUGGUAGAGUAUUG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295