miRBase entry: prd-mir-81

Stem-loop prd-mir-81


Accession
MI0025665
Description
Panagrellus redivivus prd-mir-81 precursor miRNA


Sequence

UGGGUCUAGCCUUGAAAUCAUGuuuguugucuuuucaUGAGAUCAAAAGUUAGACUCAUU
((((((((((.((((..(((((.............)))))..))))..))))))))))..

Structure
--          -C    AA     uuugu 
  UGGGUCUAGC  UUGA  UCAUG     u
  ||||||||||  ||||  |||||     g
  ACUCAGAUUG  AACU  AGUac     u
UU          AA    AG     uuuuc 


Annotation confidence Not enough data
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Genome context
KB455444.1: 63336-63395 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-81
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-81-5p

Accession MIMAT0030688
Description Panagrellus redivivus prd-miR-81-5p mature miRNA
Sequence 1 - UGGGUCUAGCCUUGAAAUCAUG - 22
Evidence experimental
Illumina [1]

Mature prd-miR-81-3p

Accession MIMAT0030689
Description Panagrellus redivivus prd-miR-81-3p mature miRNA
Sequence 38 - UGAGAUCAAAAGUUAGACUCAUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295