miRBase entry: prd-mir-7919

Stem-loop prd-mir-7919


Accession
MI0025660
Description
Panagrellus redivivus prd-mir-7919 precursor miRNA


Sequence

UAAUGCGUGUAAUAAGUACUGUauugauguugaaauuCAGCACUUAUCACAUGCAAUGCG
...(((((((.((((((.(((.(((........))).))).)))))).))))))).....

Structure
--UAA       A      A   U   gau 
     UGCGUGU AUAAGU CUG auu   g
     ||||||| |||||| ||| |||    
     ACGUACA UAUUCA GAC uaa   u
GCGUA       C      C   u   agu 


Annotation confidence Not enough data
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Genome context
KB455499.1: 53527-53586 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from prd-mir-7919
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7919-5p

Accession MIMAT0030678
Description Panagrellus redivivus prd-miR-7919-5p mature miRNA
Sequence 1 - UAAUGCGUGUAAUAAGUACUGU - 22
Evidence experimental
Illumina [1]

Mature prd-miR-7919-3p

Accession MIMAT0030679
Description Panagrellus redivivus prd-miR-7919-3p mature miRNA
Sequence 38 - CAGCACUUAUCACAUGCAAUGCG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295