miRBase entry: prd-mir-87

Stem-loop prd-mir-87


Accession
MI0025649
Description
Panagrellus redivivus prd-mir-87 precursor miRNA


Sequence

GGCCUGGGACUUGGACUCAACCUgcguaggcucgaaguucgagGUGAGCAAAGUUUCAGGUGUGC
.(((((((((((.(.((((.(((.((..((((...)))))))))))))).)))))))))))....

Structure
---G           G A    A   g  ua    c 
    GCCUGGGACUU G CUCA CCU cg  ggcu  
    ||||||||||| | |||| ||| ||  |||| g
    UGGACUUUGAA C GAGU Gga gc  uuga  
CGUG           A -    -   -  --    a 


Annotation confidence Not enough data
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Genome context
KB455127.1: 692615-692679 [+]

Database links

Mature prd-miR-87-5p

Accession MIMAT0030656
Description Panagrellus redivivus prd-miR-87-5p mature miRNA
Sequence 1 - GGCCUGGGACUUGGACUCAACCU - 23
Evidence experimental
Illumina [1]

Mature prd-miR-87-3p

Accession MIMAT0030657
Description Panagrellus redivivus prd-miR-87-3p mature miRNA
Sequence 44 - GUGAGCAAAGUUUCAGGUGUGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295