miRBase entry: prd-mir-7912

Stem-loop prd-mir-7912


Accession
MI0025646
Description
Panagrellus redivivus prd-mir-7912 precursor miRNA


Sequence

CAUUGCAUUUGGUUGUCCUUGGCUuguuacaaaucacgUAAAGGAAGUUAAAUGCAGUAG
.(((((((((((((.(((((.((.((........)).)).))))))))))))))))))..

Structure
-C             G     G  U  uua 
  AUUGCAUUUGGUU UCCUU GC ug   c
  ||||||||||||| ||||| || ||    
  UGACGUAAAUUGA AGGAA Ug ac   a
GA             -     A  c  uaa 


Annotation confidence Not enough data
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Genome context
KB455323.1: 202865-202924 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from prd-mir-7912
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7912-5p

Accession MIMAT0030650
Description Panagrellus redivivus prd-miR-7912-5p mature miRNA
Sequence 1 - CAUUGCAUUUGGUUGUCCUUGGCU - 24
Evidence experimental
Illumina [1]

Mature prd-miR-7912-3p

Accession MIMAT0030651
Description Panagrellus redivivus prd-miR-7912-3p mature miRNA
Sequence 39 - UAAAGGAAGUUAAAUGCAGUAG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295