miRBase entry: prd-mir-7939c

Stem-loop prd-mir-7939c


Accession
MI0025637
Description
Panagrellus redivivus prd-mir-7939c precursor miRNA


Sequence

CAUAGGCCCUCAAGGCAUUCauguuauuauucaaaucaUGAAUGUUUUGGAGGCCCGUGG
(((.((((.((((((((((((((.............)))))))))))))).)))).))).

Structure
-   A    C              uuauu 
 CAU GGCC UCAAGGCAUUCaug     a
 ||| |||| ||||||||||||||     u
 GUG CCGG GGUUUUGUAAGUac     u
G   C    A              uaaac 


Annotation confidence Not enough data
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Genome context
KB455091.1: 115118-115177 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from prd-mir-7939c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7939c-5p

Accession MIMAT0030632
Description Panagrellus redivivus prd-miR-7939c-5p mature miRNA
Sequence 1 - CAUAGGCCCUCAAGGCAUUC - 20
Evidence experimental
Illumina [1]

Mature prd-miR-7939c-3p

Accession MIMAT0030633
Description Panagrellus redivivus prd-miR-7939c-3p mature miRNA
Sequence 39 - UGAAUGUUUUGGAGGCCCGUGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295