miRBase entry: prd-mir-7927d

Stem-loop prd-mir-7927d


Accession
MI0025627
Description
Panagrellus redivivus prd-mir-7927d precursor miRNA


Sequence

CGGGGCGUUUCUUUGACUGAUGuuguuacguuuaUCAGUCAUUGAAGUGCUUCUGU
.((((((((((..(((((((((..........)))))))))..))))))))))...

Structure
--C          UU         uugu 
   GGGGCGUUUC  UGACUGAUG    u
   ||||||||||  |||||||||     
   CUUCGUGAAG  ACUGACUau    a
UGU          UU         uugc 


Annotation confidence Not enough data
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Genome context
KB455445.1: 33844-33899 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7927d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7927d-5p

Accession MIMAT0030612
Description Panagrellus redivivus prd-miR-7927d-5p mature miRNA
Sequence 1 - CGGGGCGUUUCUUUGACUGAUG - 22
Evidence experimental
Illumina [1]

Mature prd-miR-7927d-3p

Accession MIMAT0030613
Description Panagrellus redivivus prd-miR-7927d-3p mature miRNA
Sequence 35 - UCAGUCAUUGAAGUGCUUCUGU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295