miRBase entry: prd-mir-7918a

Stem-loop prd-mir-7918a


Accession
MI0025624
Description
Panagrellus redivivus prd-mir-7918a precursor miRNA


Sequence

AUUUGGCUCUGAAAUCUUGCUGUgucaauucaauuccaGCAAGUUCCAGAGCCUUUUGA
....(((((((.((.(((((((.(...........)))))))))).)))))))......

Structure
--AUUU       A  U       U ucaa 
      GGCUCUG AA CUUGCUG g    u
      ||||||| || ||||||| |    u
      CCGAGAC UU GAACGac c    c
AGUUUU       C  -       - uuaa 


Annotation confidence Not enough data
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Genome context
KB455157.1: 166963-167021 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7918a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7918a-5p

Accession MIMAT0030606
Description Panagrellus redivivus prd-miR-7918a-5p mature miRNA
Sequence 1 - AUUUGGCUCUGAAAUCUUGCUGU - 23
Evidence experimental
Illumina [1]

Mature prd-miR-7918a-3p

Accession MIMAT0030607
Description Panagrellus redivivus prd-miR-7918a-3p mature miRNA
Sequence 39 - GCAAGUUCCAGAGCCUUUUGA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295