miRBase entry: prd-mir-7887

Stem-loop prd-mir-7887


Accession
MI0025593
Description
Panagrellus redivivus prd-mir-7887 precursor miRNA


Sequence

GGGGUGGAUAAGGAGACGAGUACCacgcuugauagguguggUACCCGUUCUCCGUCAUCCUUCC
.(((.((((..(((((((.(((((((((((...))))))))))).)).)))))...)))).)))

Structure
G   U    -AA     -  A           g 
 GGG GGAU   GGAGA CG GUACCacgcuu  
 ||| ||||   ||||| || ||||||||||| a
 CCU CCUA   CCUCU GC CAUggugugga  
-   U    CUG     U  C           u 


Annotation confidence Not enough data
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Genome context
KB455029.1: 471460-471523 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7887
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7887-5p

Accession MIMAT0030544
Description Panagrellus redivivus prd-miR-7887-5p mature miRNA
Sequence 1 - GGGGUGGAUAAGGAGACGAGUACC - 24
Evidence experimental
Illumina [1]

Mature prd-miR-7887-3p

Accession MIMAT0030545
Description Panagrellus redivivus prd-miR-7887-3p mature miRNA
Sequence 42 - UACCCGUUCUCCGUCAUCCUUCC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295