Stem-loop prd-mir-7882

Accession

MI0025582

Description

Panagrellus redivivus prd-mir-7882 precursor miRNA

Sequence

CGACACUUUGUGGGAUGCGUUagagccaaccuuaccaaCGCAUUCCAUGGCGUGUCGCC
((((((.((((((((((((((.(((.....)))...)))))))))))))).))))))..

Structure

--      U              --a   c 
  CGACAC UUGUGGGAUGCGUU   gag c
  |||||| ||||||||||||||   ||| a
  GCUGUG GGUACCUUACGCaa   uuc a
CC      C              cca   c 

Annotation confidence Not enough data

Genome context

KB455543.1: 82436-82494 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7882

Mature prd-miR-7882-5p

• Accession: MIMAT0030522
• Description: Panagrellus redivivus prd-miR-7882-5p mature miRNA
• Sequence: 1 - CGACACUUUGUGGGAUGCGUU - 21
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7882-3p

• Accession: MIMAT0030523
• Description: Panagrellus redivivus prd-miR-7882-3p mature miRNA
• Sequence: 39 - CGCAUUCCAUGGCGUGUCGCC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295