miRBase entry: prd-mir-7873a

Stem-loop prd-mir-7873a


Accession
MI0025566
Description
Panagrellus redivivus prd-mir-7873a precursor miRNA


Sequence

AGUUCCGGACAUGAGCUUACUGugguuuuguuaucagUAAGCUCAUGUACGGUGCGCG
.((.(((.((((((((((((((............)))))))))))))).))).))...

Structure
--A  U   G              ugguu 
   GU CCG ACAUGAGCUUACUG     u
   || ||| ||||||||||||||      
   CG GGC UGUACUCGAAUgac     u
GCG  U   A              uauug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB455208.1: 122682-122739 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from prd-mir-7873a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7873a-5p

Accession MIMAT0030490
Description Panagrellus redivivus prd-miR-7873a-5p mature miRNA
Sequence 1 - AGUUCCGGACAUGAGCUUACUG - 22
Evidence experimental
Illumina [1]

Mature prd-miR-7873a-3p

Accession MIMAT0030491
Description Panagrellus redivivus prd-miR-7873a-3p mature miRNA
Sequence 38 - UAAGCUCAUGUACGGUGCGCG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295