miRBase entry: prd-let-7

Stem-loop prd-let-7


Accession
MI0025558
Description
Panagrellus redivivus prd-let-7 precursor miRNA


Sequence

UGAGGUAGUAGGUUGUAUAGUUUuugauuguauaaaaACUGUCAAUCUACUAACUUAAC
((((.((((((((((.((((((((((......)))))))))))))))))))).))))..

Structure
--    G          U          au 
  UGAG UAGUAGGUUG AUAGUUUuug  u
  |||| |||||||||| ||||||||||   
  AUUC AUCAUCUAAC UGUCAaaaau  g
CA    A          -          au 


Annotation confidence Not enough data
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Genome context
KB454933.1: 109398-109456 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-let-7-5p

Accession MIMAT0030474
Description Panagrellus redivivus prd-let-7-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUUU - 23
Evidence experimental
Illumina [1]

Mature prd-let-7-3p

Accession MIMAT0030475
Description Panagrellus redivivus prd-let-7-3p mature miRNA
Sequence 38 - ACUGUCAAUCUACUAACUUAAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295