miRBase entry: prd-mir-239

Stem-loop prd-mir-239


Accession
MI0025552
Description
Panagrellus redivivus prd-mir-239 precursor miRNA


Sequence

AUUGUACUCUCCAAGGUUUUCUGauuuauuggaacucAGAAGCUUGGUGCAGUACAAAGG
.((((((((.(((((..((((((((((....))).)))))))))))).).)))))))...

Structure
--A       - U     GU       -   a 
   UUGUACU C CCAAG  UUUCUGa uuu u
   ||||||| | |||||  ||||||| |||  
   AACAUGA G GGUUC  GAAGAcu aag u
GGA       C U     --       c   g 


Annotation confidence Not enough data
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Genome context
KB455521.1: 89576-89635 [-]

Database links

Mature prd-miR-239-5p

Accession MIMAT0030462
Description Panagrellus redivivus prd-miR-239-5p mature miRNA
Sequence 1 - AUUGUACUCUCCAAGGUUUUCUG - 23
Evidence experimental
Illumina [1]

Mature prd-miR-239-3p

Accession MIMAT0030463
Description Panagrellus redivivus prd-miR-239-3p mature miRNA
Sequence 38 - AGAAGCUUGGUGCAGUACAAAGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295