Stem-loop ptc-MIR7836

Accession

MI0025508

Description

Populus trichocarpa ptc-MIR7836 precursor miRNA

Sequence

88 reads, 1.0 reads per million, 9 experiments

aggguguguuUGGGUGGGAGGUGUGGUAGCUuuuuuuuuaagguaccauccucuuaaagcacauaccacauuuucuaaaagcaaaaaauacaugcuuuuuaguaagaggugugguagcuuuuugaaaaaaaacAACCACACCUCCCACCCAAACACCcucua
((((.((((((((((((((((((((((.(.((((((((((((.(((((((((((((..................(((((((((.........))).))))))))))))).)))))).))...))))))))))).)))))))))))))))))))))).)))).

Structure

-    u                      A C          ---  g      -       aagcacauaccacauuuu      -   aaa 
 aggg guguuUGGGUGGGAGGUGUGGU G Uuuuuuuuua   ag uaccau ccucuua                  cuaaaa gca   a
 |||| |||||||||||||||||||||| | ||||||||||   || |||||| |||||||                  |||||| |||   a
 ucuc CACAAACCCACCCUCCACACCA c aaaaaaaagu   uc auggug ggagaau                  gauuuu cgu   u
a    C                      A -          uuu  g      u       ------------------      u   aca 

Annotation confidence Low

Genome context

CM000341.2: 9237322-9237483 [-]

Mature ptc-miR7836-5p

• Accession: MIMAT0030408
• Description: Populus trichocarpa ptc-miR7836-5p mature miRNA
• Sequence: 11 - UGGGUGGGAGGUGUGGUAGCU - 31
• Evidence: experimental ; Illumina [1]

Mature ptc-miR7836-3p

• Accession: MIMAT0055702
• Description: Populus trichocarpa ptc-miR7836-3p mature miRNA
• Sequence: 134 - AACCACACCUCCCACCCAAACACC - 157
• Evidence: experimental ; unknown

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233