Stem-loop ptc-MIR7817a

Accession

MI0025477

Description

Populus trichocarpa ptc-MIR7817a precursor miRNA

Sequence

cuaacaucccucggguggcgUUUGGUUAUUGUCUCGAGACAgaaaagauggagacaaaaacuuuuuugguugaagaggcagagacaaaauaaaucugucuuugugauaauuuuagagugaauuccuguauuuucaaaacaagaaguauaaggagacaugucuuaucuacccccacugucuccgucucuuauguuucgauacaguaaccaaacgcuaccuugaguacaaggauga
....((((((((((((((((((((((((((((.((((((((....(((((((((((....((((((.....))))))(((((((((.........)))))))))((((.....((((((..((((((((((((........))))))).))))).))).))))))).........)))))))))))....)))))))).))))))))))))))))))).)))).....))))).

Structure

cuaa     -----    -                   C        gaaa           aaaacuuuuuugguugaagaggcagagacaaaauaaaucugucuuugu    auuuu   -   aa     -       caa 
    caucc     cucg gguggcgUUUGGUUAUUGU UCGAGACA    agauggagaca                                                gaua     aga gug  uuccu guauuuu   a
    |||||     |||| ||||||||||||||||||| ||||||||    |||||||||||                                                ||||     ||| |||  ||||| |||||||    
    guagg     gagu ccaucgcaaaccaaugaca agcuuugu    ucugccucugu                                                cuau     ucu uac  gagga uaugaag   a
---a     aacau    u                   u        auuc           ---------------------------------------cacccccau    -----   g   -a     a       aac 

Annotation confidence Not enough data

Genome context

CM000351.2: 1581044-1581277 [-]

Mature ptc-miR7817a

• Accession: MIMAT0030377
• Description: Populus trichocarpa ptc-miR7817a mature miRNA
• Sequence: 21 - UUUGGUUAUUGUCUCGAGACA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233