Stem-loop bdi-MIR7750

Accession

MI0025368

Description

Brachypodium distachyon bdi-MIR7750 precursor miRNA

Sequence

3934 reads, 40.0 reads per million, 21 experiments

gaggaaacUCAUCUGAAUCAUUGCCGACCaugcaacauaguacuauccuuggagacuaauguuaugaaagauuguuuacaugaugccauuugacuugaaacuugaauuauugcaguaguuacucauuuugguuuaucuaaaaaguaaagugauuccuaaaacugcugcgaauauugcuagugaugcaagcaacaugggguuauugcauuacaguaagaugcaauucaauacccuuuuccuaguuucuugcaucacuaacaaugaucguagcagcuucaccuuuuaaagaaaacauaagugaguaguuauuguauucaagcuucaacucaaauggcaucaugcgaaccauuugucauuuugucguaacauuaaucaccAGGAUAGUACUACAUUGCAUGGUCggcaaugauacagacgagacuggucccua
..(((..(((.((((.(((((((((((((((((((..((((((((((((.((.((.((((((((((((((((.((((.(((((((((((((((.(((((.(((((((....(((((((((((((((((..((((.(((.(((((....((((.........(((((((((.(((((.((((((((((((.(((.(((((..((((((((.......))))))))............)))))))).)))))))))))).))))).)))))))))..)))))))))..)))))))..)))))))))))))))))))))))).))))).))))))))))))))).))))........))))).))))))))))).)).))))))))))))))..))))))))))))))))))).)))).))).....)))...

Structure

-ga   ---aa   A    A                   ca            u  a  c           -     -------u    a               c     a       uauu                 ug    a   -a     uaaa    uuccuaaaa         a     c            c   a     ----------uu        ac 
   gga     cUC UCUG AUCAUUGCCGACCaugcaa  uaguacuauccu gg ga uaauguuauga aagau        guuu caugaugccauuuga uugaa cuugaau    gcaguaguuacucauuu  guuu ucu  aaaag    guga         cugcugcga uauug uagugaugcaag aac ugggg            auugcauu  a
   |||     ||| |||| |||||||||||||||||||  |||||||||||| || || ||||||||||| |||||        |||| ||||||||||||||| ||||| |||||||    |||||||||||||||||  |||| |||  |||||    ||||         ||||||||| ||||| |||||||||||| ||| |||||            ||||||||  g
   ccu     gag agac uaguaacggCUGGUACGUU  AUCAUGAUAGGA cc cu auuacaaugcu uuuua        caag guacuacgguaaacu aacuu gaacuua    uguuauugaugagugaa  caaa aga  uuuuc    cacu         gacgaugcu guaac aucacuacguuc uug auccu            uaacguag  u
auc   gguca   c    a                   AC            -  a  a           g     cuguuuac    c               c     c       ----                 ua    -   aa     ----    -------uc         a     a            u   -     uuucccauaacu        aa 

Annotation confidence Medium

Genome context

4: 5126959-5127388 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7750

Mature bdi-miR7750-5p

• Accession: MIMAT0030240
• Description: Brachypodium distachyon bdi-miR7750-5p mature miRNA
• Sequence: 9 - UCAUCUGAAUCAUUGCCGACC - 29
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7750-3p

• Accession: MIMAT0030241
• Description: Brachypodium distachyon bdi-miR7750-3p mature miRNA
• Sequence: 378 - AGGAUAGUACUACAUUGCAUGGUC - 401
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443