Stem-loop crm-mir-35i

Accession

MI0025056

Description

Caenorhabditis remanei crm-mir-35i precursor miRNA

Literature search

1 open access papers mention crm-mir-35i
(1 sentences)

Sequence

2396 reads, 43.0 reads per million, 5 experiments

CACUGGUUUUUGCUGCGGUAAUAuuucucagaaucaauaUCACCGGGUAAAAAUCAGGGCA
..((((((((((((.((((.(((((..........))))).))))))))))))))))....

Structure

--CA            G    A     ucuc 
    CUGGUUUUUGCU CGGU AUAuu    a
    |||||||||||| |||| |||||     
    GACUAAAAAUGG GCCA Uauaa    g
ACGG            -    C     cuaa 

Annotation confidence High

Genome context

Crem_Contig93: 224032-224092 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35i

Mature crm-miR-35i-5p

• Accession: MIMAT0056911
• Description: Caenorhabditis remanei crm-miR-35i-5p mature miRNA
• Sequence: 1 - CACUGGUUUUUGCUGCGGUAAUA - 23
• Evidence: experimental ; Illumina [1]

Mature crm-miR-35i-3p

• Accession: MIMAT0029924
• Description: Caenorhabditis remanei crm-miR-35i-3p mature miRNA
• Sequence: 40 - UCACCGGGUAAAAAUCAGGGCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508