miRBase entry: mmu-mir-219b

Stem-loop mmu-mir-219b


Accession
MI0024990
Symbol
MGI: Mir219b
Description
Mus musculus mmu-mir-219b precursor miRNA

Literature search
48 open access papers mention mmu-mir-219b
(464 sentences)

Sequence

46620 reads, 9 reads per million, 93 experiments
AGAUGUCCAGCCACAAUUCUCGguuggccgcagacucguacaAGAAUUGCGUUUGGACAAUCAGU
.(((((((((.(.((((((((((((.......))).))....))))))).).)))))).)))...

Structure
--A   -      C A       ----  -   gg 
   GAU GUCCAG C CAAUUCU    CG guu  c
   ||| |||||| | |||||||    || |||  c
   CUA CAGGUU G GUUAAGA    gc cag  g
UGA   A      U C       acau  u   ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 29845647-29845711 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-219b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-219b-5p

Accession MIMAT0029806
Description Mus musculus mmu-miR-219b-5p mature miRNA
Sequence 1 - AGAUGUCCAGCCACAAUUCUCG - 22
Evidence experimental
RNAseq [1]

Mature mmu-miR-219b-3p

Accession MIMAT0029807
Description Mus musculus mmu-miR-219b-3p mature miRNA
Sequence 43 - AGAAUUGCGUUUGGACAAUCAGU - 65
Evidence experimental
RNAseq [1]

References

  1. PubMed ID: 23325850
    Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
    "Castellano L, Stebbing J"
    "Nucleic Acids Res (2013) 41:3339-3351