miRBase entry: crm-mir-7613

Stem-loop crm-mir-7613


Accession
MI0024778
Description
Caenorhabditis remanei crm-mir-7613 precursor miRNA


Sequence

481092 reads, 4662.0 reads per million, 9 experiments
CAUGACACCUACUCGCUCGACGUCGuaucgcugaaacgACCGGGUGGUGAGGUGGCAUACC
.(((.(((((((.((((((..(((((.((...)).))))))))))))).))))).)))...

Structure
--C   A     -  U      AC     a  g 
   AUG CACCU AC CGCUCG  GUCGu uc  
   ||| ||||| || ||||||  ||||| || c
   UAC GUGGA UG GUGGGC  CAgca ag  
CCA   G     G  -      --     a  u 


Annotation confidence High
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Genome context
Crem_Contig41: 71834-71894 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from crm-mir-7613
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-7613-5p

Accession MIMAT0029639
Description Caenorhabditis remanei crm-miR-7613-5p mature miRNA
Sequence 1 - CAUGACACCUACUCGCUCGACGUCG - 25
Evidence experimental
Illumina [1]

Mature crm-miR-7613-3p

Accession MIMAT0056900
Description Caenorhabditis remanei crm-miR-7613-3p mature miRNA
Sequence 39 - ACCGGGUGGUGAGGUGGCAUACC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508