Stem-loop crm-mir-1822

Accession

MI0024748

Description

Caenorhabditis remanei crm-mir-1822 precursor miRNA

Sequence

36359 reads, 321.0 reads per million, 9 experiments

AGUUUAUCCAGGAAAGCUAUCGGCcgaguacuuagaaccGAGCUGCCCUCGGAUAGACUCU
((((((((((((..(((..((((..............)))))))..))).)))))))))..

Structure

--         -   AA   UA    Ccgagu 
  AGUUUAUCC AGG  AGC  UCGG      a
  ||||||||| |||  |||  ||||       
  UCAGAUAGG UCC  UCG  AGcc      c
UC         C   CG   --    aagauu 

Annotation confidence High

Genome context

Crem_Contig6: 1917111-1917171 [-]

Mature crm-miR-1822-5p

• Accession: MIMAT0056883
• Description: Caenorhabditis remanei crm-miR-1822-5p mature miRNA
• Sequence: 1 - AGUUUAUCCAGGAAAGCUAUCGGC - 24
• Evidence: experimental ; Illumina [1]

Mature crm-miR-1822-3p

• Accession: MIMAT0029611
• Description: Caenorhabditis remanei crm-miR-1822-3p mature miRNA
• Sequence: 40 - GAGCUGCCCUCGGAUAGACUCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508