miRBase entry: cbr-mir-124c

Stem-loop cbr-mir-124c


Accession
MI0024745
Description
Caenorhabditis briggsae cbr-mir-124c precursor miRNA

Literature search
2 open access papers mention cbr-mir-124c
(21 sentences)

Sequence

acggcauuggcagugaccuuaauagagaacagucaacucauUAAGGCACUUCCAAGCCGUAC
(((((.((((.((((.(((((((.(((.........)))))))))))))).)))))))))..

Structure
--     a    c    a       a   aac 
  acggc uugg agug ccuuaau gag   a
  ||||| |||| |||| ||||||| |||   g
  UGCCG AACC UCAC GGAAUua cuc   u
CA     -    U    -       -   aac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 1609141-1609202 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-124c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-124c

Accession MIMAT0029608
Description Caenorhabditis briggsae cbr-miR-124c mature miRNA
Sequence 42 - UAAGGCACUUCCAAGCCGUAC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508