Stem-loop lja-MIR397

Accession

MI0024386

Description

Lotus japonicus lja-MIR397 precursor miRNA

Literature search

1 open access papers mention lja-MIR397
(15 sentences)

Sequence

ucucagaugaauuguaaauucccauauuggauaaacauUAUUGAGUGCAGCGUUGAUGAaguccugaacugcauugugcuauaagggagaagccaaaugcuuuuaucgacgcugcacucaaucauguuuuuuagcaauaugguucaaucgugaga
(((((((((((..........((((((((...((((((.(((((((((((((((((((((.((((.....(((...))).....))))..(((.....)))))))))))))))))))))))).)))))).....))))))))))).))).)))))

Structure

     -   -   uuguaaauuc        --gau      U                     ------------g    gaacu   u 
ucuca gau gaa          ccauauug     aaacau AUUGAGUGCAGCGUUGAUGAa             uccu     gca  
||||| ||| |||          ||||||||     |||||| |||||||||||||||||||||             ||||     ||| u
agagu cua cuu          gguauaac     uuugua uaacucacgucgcagcuauuu             aggg     cgu  
     g   a   ----------        gauuu      c                     ucguaaaccgaag    aauau   g 

Annotation confidence Not enough data

Genome context

Chr0: 31433003-31433157 [+]

Mature lja-miR397

• Accession: MIMAT0029326
• Description: Lotus japonicus lja-miR397 mature miRNA
• Sequence: 39 - UAUUGAGUGCAGCGUUGAUGA - 59
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154