Stem-loop lja-MIR171d

Accession

MI0024380

Description

Lotus japonicus lja-MIR171d precursor miRNA

Literature search

2 open access papers mention lja-MIR171d
(8 sentences)

Sequence

gagaaagCGAUGUUGGUGAGGUUCAAUCugaagacggauuuacaugaagaagcaguaaaauacgaucucagaUUGAGCCGCGCCAAUAUCACUuuucuu
..(((((.((((((((((.((((((((((((.((((..(((((.((......)))))))...)).)))))))))))))).)))))))))).)))))...

Structure

-ga     C          A            a  -  -ga     a  aa 
   gaaag GAUGUUGGUG GGUUCAAUCuga ga cg   uuuac ug  g
   ||||| |||||||||| |||||||||||| || ||   ||||| ||   
   uuuUC CUAUAACCGC CCGAGUUagacu cu gc   aaaug ac  a
uuc     A          G            -  a  aua     -  ga 

Annotation confidence Not enough data

Genome context

Chr4: 27721691-27721789 [+]

Mature lja-miR171d-3p

• Accession: MIMAT0029317
• Description: Lotus japonicus lja-miR171d-3p mature miRNA
• Sequence: 8 - CGAUGUUGGUGAGGUUCAAUC - 28
• Evidence: experimental ; cloned [1]

Mature lja-miR171d-5p

• Accession: MIMAT0029318
• Description: Lotus japonicus lja-miR171d-5p mature miRNA
• Sequence: 73 - UUGAGCCGCGCCAAUAUCACU - 93
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154