Stem-loop mes-MIR396b

Accession

MI0024316

Description

Manihot esculenta mes-MIR396b precursor miRNA

Literature search

3 open access papers mention mes-MIR396b
(13 sentences)

Sequence

gauccucuuuguauucUUCCACAGCUUUCUUGAACUGcaucuacuaugaacuugaugauuguugcauggcggauucuuguuuuuguuuuguugcgguucaauaaagcugugggaagauacugauaggguc
((((((.((.(((((.((((((((((((.(((((((((((((.((((((((.........))).))))).)))..................)))))))))).)))))))))))).))))).)).))))))

Structure

      c  u     c            C          ------------------   a     -   uug 
gauccu uu guauu UUCCACAGCUUU UUGAACUGca                  ucu cuaug aac   a
|||||| || ||||| |||||||||||| ||||||||||                  ||| ||||| |||   u
cuggga ag cauag agggugucgaaa aacuuggcgu                  agg gguac uug   g
      u  u     a            u          uguuuuguuuuuguucuu   c     g   uua 

Annotation confidence Low

Genome context

scaffold05297: 2437-2566 [+]

Mature mes-miR396b

• Accession: MIMAT0029274
• Description: Manihot esculenta mes-miR396b mature miRNA
• Sequence: 17 - UUCCACAGCUUUCUUGAACUG - 37
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269