Stem-loop mes-MIR393c

Accession

MI0024306

Description

Manihot esculenta mes-MIR393c precursor miRNA

Literature search

4 open access papers mention mes-MIR393c
(18 sentences)

Sequence

uuagugcaggguggagaguUCCAAAGGGAUCGCAUUGAUCUgaugauuucugcugauucgucucaaugaucguuaaucaucauuuuuguucauuggaucaugcgaucccuuuagaauuuuccaccacuugcucuaa
.(((.((((((((((((((((.(((((((((((((.((((((((((....((.(((((((((.....)).))..))))).)).......))))))))))))))))))))))).)))))))))))).).))).))).

Structure

u   u   - -            C             U          ---uuuc  c     --  -  u 
 uag gca g gguggagaguUC AAAGGGAUCGCAU GAUCUgauga       ug ugauu  cg uc c
 ||| ||| | |||||||||||| ||||||||||||| ||||||||||       || |||||  || || a
 auc cgu c ccaccuuuuaag uuucccuagcgua cuagguuacu       ac acuaa  gc ag a
a   u   u a            a             -          uguuuuu  u     uu  u  u 

Annotation confidence Not enough data

Genome context

scaffold11425: 152114-152249 [+]

Mature mes-miR393c

• Accession: MIMAT0029264
• Description: Manihot esculenta mes-miR393c mature miRNA
• Sequence: 20 - UCCAAAGGGAUCGCAUUGAUCU - 41
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269