Stem-loop mes-MIR169ac

Accession

MI0024279

Description

Manihot esculenta mes-MIR169ac precursor miRNA

Literature search

10 open access papers mention mes-MIR169ac
(28 sentences)

Sequence

guuugaUAGCCAAGGAUGACUUGCCUaucuccuccaacaggguuucaaacagaugaauaaugcagaagaaugcggugggauuaaucuggauuuggagcucuuuuguggcucauaggcagucuccuucggcuagucugac
(((.((((((((((((.((((.((((((..((..(((.((((((((((((((((.(((..((((......)))).....))).)))))..))))))))))).))).))...))))))))))))))).)))).))).)))

Structure

   u   -    -     U    U      -cu  uc   c           --     g   ---aa    ga 
guu gaU AGCC AAGGA GACU GCCUau   cc  caa aggguuucaaa  cagau aau     ugca  a
||| ||| |||| ||||| |||| ||||||   ||  ||| |||||||||||  ||||| |||     ||||   
cag cug ucgg uuccu cuga cggaua   gg  guu ucucgagguuu  gucua uua     gcgu  g
   u   a    c     -    -      cuc  -u   u           ag     a   gggug    aa 

Annotation confidence Not enough data

Genome context

scaffold01701: 436630-436768 [+]

Mature mes-miR169ac

• Accession: MIMAT0029237
• Description: Manihot esculenta mes-miR169ac mature miRNA
• Sequence: 7 - UAGCCAAGGAUGACUUGCCU - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85