Stem-loop mdo-mir-449c

Accession

MI0023812

Description

Monodelphis domestica mdo-mir-449c precursor miRNA

Sequence

627 reads, 50 reads per million, 3 experiments

GGGCAGUGUAUUGUUAGUUAGcuguuuuucauaagugcagcAACUGCAUACACUUCCAU
(((.(((((((.((.((((.(((((...........)))))))))))))))))))))..

Structure

--   C       U  U    A     uuuu 
  GGG AGUGUAU GU AGUU Gcugu    c
  ||| ||||||| || |||| |||||    a
  CCU UCACAUA CG UCAA cgacg    u
UA   -       -  -    -     ugaa 

Annotation confidence High

Genome context

chr3: 17544592-17544650 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-449c

Mature mdo-miR-449c-5p

• Accession: MIMAT0028580
• Description: Monodelphis domestica mdo-miR-449c-5p mature miRNA
• Sequence: 1 - GGGCAGUGUAUUGUUAGUUAG - 21
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-449c-3p

• Accession: MIMAT0028581
• Description: Monodelphis domestica mdo-miR-449c-3p mature miRNA
• Sequence: 42 - AACUGCAUACACUUCCAU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45