Stem-loop bma-mir-5869

Accession

MI0023471

Description

Brugia malayi bma-mir-5869 precursor miRNA

Sequence

uuuugaggugaaagaagaggcgaugaaguggagggacguggagcggugaaaaaacuaguUUCCGCUCCUCUUCUUCAUCCUccuaauucacugucaucccagc
..(((.(((((..(((.(((.(((((((.((((((.((.((((((((......))).))))))).)))))).)))))))..)))..)))....))))).))).

Structure

uu   a     --aa   -g   -c       u      a  u     -   ga 
  uug gguga    gaa  agg  gaugaag ggaggg cg ggagc ggu  a
  ||| |||||    |||  |||  ||||||| |||||| || ||||| |||   
  gac cuacu    cuu  ucc  CUACUUC UCUCCU GC CUUug uca  a
-c   c     guca   aa   UC       U      C  -     a   aa 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold10: 127547-127649 [+]

Mature bma-miR-5869

• Accession: MIMAT0026368
• Description: Brugia malayi bma-miR-5869 mature miRNA
• Sequence: 60 - UUCCGCUCCUCUUCUUCAUCCU - 81
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4