Stem-loop bma-mir-5863

Accession

MI0023464

Description

Brugia malayi bma-mir-5863 precursor miRNA

Sequence

accggcgguuggaagggugccggGCCAGACUGUACUGCGUCACAGucuucuucuuccaugacuggaacgcguauuguucgagaacgccugaaauauauuuauucaag
.((((((.((....)).))))))....(((.((((.((((..(((((............)))))..)))))))).)))..........((((.((....))))))..

Structure

--accggcgguuggaagggugccggGCCA   U    U    CA     uucuu 
                             GAC GUAC GCGU  CAGuc     c
                             ||| |||| ||||  |||||      
                             uug uaug cgca  gucag     u
gaacuuauuuauauaaaguccgcaagagc   u    -    ag     uaccu 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold12: 622038-622144 [+]

Mature bma-miR-5863

• Accession: MIMAT0026362
• Description: Brugia malayi bma-miR-5863 mature miRNA
• Sequence: 24 - GCCAGACUGUACUGCGUCACAG - 45
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4