Stem-loop ccr-mir-7b

Accession

MI0023417

Description

Cyprinus carpio ccr-mir-7b precursor miRNA

Literature search

3 open access papers mention ccr-mir-7b
(3 sentences)

Sequence

7041 reads, 112.0 reads per million, 33 experiments

gaacgcuggcuugcuucugugUGGAAGACUUGUGAUUUUGUUGUuguuaguuagaugaagugaCAACAAAUCACGGUCUGCCCUacagcacaggcccagca
....(((((((((...(((((.((.(((((.((((((....((((((((.((.....)).))))))))))))))))))).)).)))))..)))).))))).

Structure

gaac     -    cuu     U  A     U      UUGU        g  a 
    gcugg cuug   cugug GG AGACU GUGAUU    UGUuguua uu g
    ||||| ||||   ||||| || ||||| ||||||    |||||||| || a
    cgacc ggac   gacaU CC UCUGG CACUAA    ACAACagu aa u
---a     c    -ac     C  G     -      ----        g  g 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-7b-5p

• Accession: MIMAT0026320
• Description: Cyprinus carpio ccr-miR-7b-5p mature miRNA
• Sequence: 22 - UGGAAGACUUGUGAUUUUGUUGU - 44
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-7b-3p

• Accession: MIMAT0058351
• Description: Cyprinus carpio ccr-miR-7b-3p mature miRNA
• Sequence: 64 - CAACAAAUCACGGUCUGCCCU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925