Stem-loop ccr-mir-7a

Accession

MI0023416

Description

Cyprinus carpio ccr-mir-7a precursor miRNA

Literature search

4 open access papers mention ccr-mir-7a
(4 sentences)

Sequence

23175 reads, 165.0 reads per million, 33 experiments

auuuugggcaccaUGGAAGACUAGUGAUUUUGUUGUUgugaagucaccggugcugaCAACAAGUCACAGUCUGCCUCAgugaccagaau
(((((((.(((...((.(((((.(((((((.(((((((((....))).......)))))))))))))))))).))...))).)))))))

Structure

       g   caU  A     A       U      -------   a 
auuuugg cac   GG AGACU GUGAUUU GUUGUU       gug a
||||||| |||   || ||||| ||||||| ||||||       |||  
uaagacc gug   CC UCUGA CACUGAA CAACag       cac g
       a   ACU  G     -       -      ucguggc   u 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-7a-5p

• Accession: MIMAT0026319
• Description: Cyprinus carpio ccr-miR-7a-5p mature miRNA
• Sequence: 14 - UGGAAGACUAGUGAUUUUGUUGUU - 37
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-7a-3p

• Accession: MIMAT0058350
• Description: Cyprinus carpio ccr-miR-7a-3p mature miRNA
• Sequence: 57 - CAACAAGUCACAGUCUGCCUCA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925