Stem-loop ccr-mir-729

Accession

MI0023413

Description

Cyprinus carpio ccr-mir-729 precursor miRNA

Literature search

1 open access papers mention ccr-mir-729
(1 sentences)

Sequence

1174 reads, 7.0 reads per million, 26 experiments

cauccauugaccCGGGGUUGUAUUGUAACCAAGCUaugcaucugaguugCAUGGGUAUGAUACGACCUGGGuuacggga
..(((..(((((((((.((((((((((.((....((((((.......)))))))))))))))))))))))))))..)))

Structure

ca   au         G          A  AAGC      uc 
  ucc  ugaccCGGG UUGUAUUGUA CC    Uaugca  u
  |||  ||||||||| |||||||||| ||    ||||||  g
  agg  auuGGGUCC AGCAUAGUAU GG    GUACgu  a
--   gc         -          -  ----      ug 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-729-5p

• Accession: MIMAT0058347
• Description: Cyprinus carpio ccr-miR-729-5p mature miRNA
• Sequence: 13 - CGGGGUUGUAUUGUAACCAAGCU - 35
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-729-3p

• Accession: MIMAT0026316
• Description: Cyprinus carpio ccr-miR-729-3p mature miRNA
• Sequence: 50 - CAUGGGUAUGAUACGACCUGGG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925