Stem-loop ccr-mir-34

Accession

MI0023392

Description

Cyprinus carpio ccr-mir-34 precursor miRNA

Literature search

1 open access papers mention ccr-mir-34
(1 sentences)

Sequence

9918 reads, 49.0 reads per million, 32 experiments

ucuuUGGCAGUGUCUUAGCUGGUUGUuguguggagugagaacgaagcAAUCAGCAAGUAUACUGCCGCagaaa
(((.((((((((((((.((((((((((.(((.........))).))))))))))))).))))))))).)))..

Structure

--   u         -   A          g   gga 
  ucu UGGCAGUGU CUU GCUGGUUGUu ugu   g
  ||| ||||||||| ||| |||||||||| |||   u
  aga GCCGUCAUA GAA CGACUAAcga gca   g
aa   C         U   -          a   aga 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-34-5p

• Accession: MIMAT0026292
• Description: Cyprinus carpio ccr-miR-34-5p mature miRNA
• Sequence: 5 - UGGCAGUGUCUUAGCUGGUUGU - 26
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-34-3p

• Accession: MIMAT0058330
• Description: Cyprinus carpio ccr-miR-34-3p mature miRNA
• Sequence: 48 - AAUCAGCAAGUAUACUGCCGC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925