Stem-loop ccr-mir-30b

Accession

MI0023389

Description

Cyprinus carpio ccr-mir-30b precursor miRNA

Literature search

3 open access papers mention ccr-mir-30b
(9 sentences)

Sequence

852990 reads, 4271.0 reads per million, 33 experiments

uaauauuccaguguagucguUGUAAACAUCCUACACUCAGCUguaaucugcacaugaggCUGGGAGGAGGGUGUUUGCUGUgacugacuggagcuccuc
.....(((((((.((((((..(((((((((((...(((((((...............)))))))...)))))))))))..)))))))))))))......

Structure

-uaaua       g      uU           ACA       guaauc 
      uuccagu uagucg  GUAAACAUCCU   CUCAGCU      u
      ||||||| ||||||  |||||||||||   |||||||      g
      gagguca gucagU  CGUUUGUGGGA   GGGUCgg      c
cuccuc       -      GU           GGA       aguaca 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-30b-5p

• Accession: MIMAT0026289
• Description: Cyprinus carpio ccr-miR-30b-5p mature miRNA
• Sequence: 21 - UGUAAACAUCCUACACUCAGCU - 42
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-30b-3p

• Accession: MIMAT0058327
• Description: Cyprinus carpio ccr-miR-30b-3p mature miRNA
• Sequence: 60 - CUGGGAGGAGGGUGUUUGCUGU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925