Stem-loop ccr-mir-29a

Accession

MI0023386

Description

Cyprinus carpio ccr-mir-29a precursor miRNA

Literature search

2 open access papers mention ccr-mir-29a
(3 sentences)

Sequence

454953 reads, 1696.0 reads per million, 33 experiments

cccaucucuccccaccaaaggaugACUGAUUUCCUCUGGUGCUUAGAgucucuucugucaucUAGCACCAUUUGAAAUCGGUUAuaaugacuggggaucaauu
........((((((....(..((((((((((((...(((((((.((((.(......).).))))))))))...))))))))))))..)...))))))......

Structure

cccaucuc      ccaa gg            CUC       U   - u uc 
        ucccca    a  augACUGAUUUC   UGGUGCU AGA g c  u
        ||||||    |  ||||||||||||   ||||||| ||| | |   
        aggggu    u  uAUUGGCUAAAG   ACCACGA Ucu c g  u
--uuaacu      -cag aa            UUU       -   a u uc 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-29a-5p

• Accession: MIMAT0058324
• Description: Cyprinus carpio ccr-miR-29a-5p mature miRNA
• Sequence: 25 - ACUGAUUUCCUCUGGUGCUUAGA - 47
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-29a-3p

• Accession: MIMAT0026286
• Description: Cyprinus carpio ccr-miR-29a-3p mature miRNA
• Sequence: 63 - UAGCACCAUUUGAAAUCGGUUA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925