Stem-loop ccr-mir-23a

Accession

MI0023378

Description

Cyprinus carpio ccr-mir-23a precursor miRNA

Literature search

1 open access papers mention ccr-mir-23a
(2 sentences)

Sequence

87100 reads, 677.0 reads per million, 33 experiments

ccagcuggagGGAUUCCUGGCAGAGUGAUUUgggauuauaucauaaaAUCACAUUGCCAGGGAUUUCCaaccagcu
..((((((.((((((((((((((.(((((((..(((...)))...))))))).))))))))))))))...))))))

Structure

cc      --a              A       -gg   u 
  agcugg   gGGAUUCCUGGCAG GUGAUUU   gau  
  ||||||   |||||||||||||| |||||||   ||| a
  ucgacc   CUUUAGGGACCGUU CACUAaa   cua  
--      aaC              A       aua   u 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-23a-5p

• Accession: MIMAT0058317
• Description: Cyprinus carpio ccr-miR-23a-5p mature miRNA
• Sequence: 11 - GGAUUCCUGGCAGAGUGAUUU - 31
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-23a-3p

• Accession: MIMAT0026277
• Description: Cyprinus carpio ccr-miR-23a-3p mature miRNA
• Sequence: 48 - AUCACAUUGCCAGGGAUUUCC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925