Stem-loop ccr-mir-200b

Accession

MI0023362

Description

Cyprinus carpio ccr-mir-200b precursor miRNA

Literature search

1 open access papers mention ccr-mir-200b
(4 sentences)

Sequence

298631 reads, 2480.0 reads per million, 33 experiments

uggguagucuucucCAUCUUACGAGGCAGCAUUGGAUuucauuauuuucucUAAUACUGCCUGGUAAUGAUGAugauggcuguccac
(((((((((.((..((((((((.((((((.((((((.............)))))).)))))).)))).))))..)).))))))))).

Structure

-         u  uc    -    G      C      Uuuca 
 uggguaguc uc  CAUC UUAC AGGCAG AUUGGA     u
 ||||||||| ||  |||| |||| |||||| ||||||     u
 accugucgg ag  GUAG AAUG UCCGUC UAAUcu     a
c         u  uA    U    G      A      cuuuu 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-200b-5p

• Accession: MIMAT0058303
• Description: Cyprinus carpio ccr-miR-200b-5p mature miRNA
• Sequence: 15 - CAUCUUACGAGGCAGCAUUGGAU - 37
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-200b-3p

• Accession: MIMAT0026259
• Description: Cyprinus carpio ccr-miR-200b-3p mature miRNA
• Sequence: 52 - UAAUACUGCCUGGUAAUGAUGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925