Stem-loop ccr-mir-142-1

Accession

MI0023327

Description

Cyprinus carpio ccr-mir-142-1 precursor miRNA

Literature search

1 open access papers mention ccr-mir-142-1
(1 sentences)

Sequence

667488 reads, 2508.0 reads per million, 32 experiments

gcgggaacaucagugcagucacuCAUAAAGUAGACAGCACUACUaaaggucucuacacaguGUAGUGUUUCCUACUUUAUGGAUGaguguacuguuugcugc
((((.((...(((((((.(((.(((((((((((..((((((((.....((....)).....))))))))..))))))))))).))).))))))).)).))))

Structure

    g  cau       g   c           AC        Uaaag  c 
gcgg aa   cagugca uca uCAUAAAGUAG  AGCACUAC     gu u
|||| ||   ||||||| ||| |||||||||||  ||||||||     ||  
cguc uu   gucaugu aGU GGUAUUUCAUC  UUGUGAUG     ca c
    g  --u       g   A           CU        ugaca  u 

Annotation confidence Medium

Genome context

Unknown

Mature ccr-miR-142-5p

• Accession: MIMAT0026222
• Description: Cyprinus carpio ccr-miR-142-5p mature miRNA
• Sequence: 24 - CAUAAAGUAGACAGCACUACU - 44
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-142-3p

• Accession: MIMAT0026223
• Description: Cyprinus carpio ccr-miR-142-3p mature miRNA
• Sequence: 62 - GUAGUGUUUCCUACUUUAUGGAUG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925