Stem-loop ccr-mir-130a

Accession

MI0023317

Description

Cyprinus carpio ccr-mir-130a precursor miRNA

Literature search

1 open access papers mention ccr-mir-130a
(2 sentences)

Sequence

78420 reads, 313.0 reads per million, 33 experiments

gucuguccaguGCCCCUUUUAUAUUGUACUACUgauaacccaguuauuauagCAGUGCAAUGUUAAAAGGGCAUuggccagg
..(((.(((((((((.(((.((((((((((.((((((((...))))))..)).)))))))))).))).))))))))).))).

Structure

gu   u         C   U          A  --      c 
  cug ccaguGCCC UUU AUAUUGUACU CU  gauaac  
  ||| ||||||||| ||| |||||||||| ||  |||||| c
  gac gguUACGGG AAA UGUAACGUGA ga  uuauug  
-g   c         A   U          C  ua      a 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-130a-5p

• Accession: MIMAT0058267
• Description: Cyprinus carpio ccr-miR-130a-5p mature miRNA
• Sequence: 12 - GCCCCUUUUAUAUUGUACUACU - 33
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-130a-3p

• Accession: MIMAT0026210
• Description: Cyprinus carpio ccr-miR-130a-3p mature miRNA
• Sequence: 53 - CAGUGCAAUGUUAAAAGGGCAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925