Stem-loop ccr-mir-125c

Accession

MI0023313

Description

Cyprinus carpio ccr-mir-125c precursor miRNA

Literature search

1 open access papers mention ccr-mir-125c
(1 sentences)

Sequence

206086 reads, 924.0 reads per million, 33 experiments

ugcccuccucuuguUCCCUGAGACCCUAACUCGUGAguucuucuuucaaaaucACGGGUCAGGAGCUUGGGAGACagguggagggcuuua
.(((((((.((((((.((((((..(((.((((((((...............)))))))).)))..)))))).)))))).)))))))....

Structure

---u       u      C      AC   A        guucuu 
    gcccucc cuuguU CCUGAG  CCU ACUCGUGA      c
    ||||||| |||||| ||||||  ||| ||||||||      u
    cgggagg ggaCAG GGGUUC  GGA UGGGCAcu      u
auuu       u      A      GA   C        aaaacu 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-125c-5p

• Accession: MIMAT0026205
• Description: Cyprinus carpio ccr-miR-125c-5p mature miRNA
• Sequence: 15 - UCCCUGAGACCCUAACUCGUGA - 36
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-125c-3p

• Accession: MIMAT0058264
• Description: Cyprinus carpio ccr-miR-125c-3p mature miRNA
• Sequence: 54 - ACGGGUCAGGAGCUUGGGAGAC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925