Stem-loop ccr-mir-10b

Accession

MI0023308

Description

Cyprinus carpio ccr-mir-10b precursor miRNA

Literature search

3 open access papers mention ccr-mir-10b
(6 sentences)

Sequence

4141641 reads, 26387.0 reads per million, 33 experiments

aaaggccugucaguagucgucuauaugUACCCUGUAGAACCGAAUUUGUguccaaaacaugaaaaucgCAAAUACGUCUCUACAGGAAUacaugggcgacguaaaagccacg
...(((.........(((((((..(((((.((((((((..((.(((((((................))))))).))..))))))))..))))))))))))......)))...

Structure

aaa   cugucagua       au     -C        AC  A       uccaaaa 
   ggc         gucgucu  augUA  CCUGUAGA  CG AUUUGUg       c
   |||         |||||||  |||||  ||||||||  || |||||||        
   ccg         cagcggg  uacaU  GGACAUCU  GC UAAACgc       a
gca   ---aaaaug       --     AA        CU  A       uaaaagu 

Annotation confidence Medium

Genome context

Unknown

Mature ccr-miR-10b-5p

• Accession: MIMAT0026200
• Description: Cyprinus carpio ccr-miR-10b-5p mature miRNA
• Sequence: 28 - UACCCUGUAGAACCGAAUUUGU - 49
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-10b-3p

• Accession: MIMAT0058260
• Description: Cyprinus carpio ccr-miR-10b-3p mature miRNA
• Sequence: 69 - CAAAUACGUCUCUACAGGAAU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925