Stem-loop ccr-mir-1

Accession

MI0023302

Description

Cyprinus carpio ccr-mir-1 precursor miRNA

Literature search

5 open access papers mention ccr-mir-1
(14 sentences)

Sequence

282108 reads, 1602.0 reads per million, 33 experiments

ugccuacuugguguACAUACUUCUUUAUGUGCCCAUaugaacauaugacagcuaUGGAAUGUAAAGAAGUAUGUAUucuuggucaggu
.(((((((.((.((((((((((((((((((..(((((...............))))).)))))))))))))))))).)).))).))))

Structure

u    -   u  u                  GC     ugaaca 
 gccu acu gg guACAUACUUCUUUAUGU  CCAUa      u
 |||| ||| || ||||||||||||||||||  |||||      a
 ugga ugg uc UAUGUAUGAAGAAAUGUA  GGUau      u
-    c   u  u                  -A     cgacag 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-1-5p

• Accession: MIMAT0058254
• Description: Cyprinus carpio ccr-miR-1-5p mature miRNA
• Sequence: 15 - ACAUACUUCUUUAUGUGCCCAU - 36
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-1-3p

• Accession: MIMAT0026194
• Description: Cyprinus carpio ccr-miR-1-3p mature miRNA
• Sequence: 55 - UGGAAUGUAAAGAAGUAUGUAU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925