Stem-loop ccr-let-7j

Accession

MI0023301

Description

Cyprinus carpio ccr-let-7j precursor miRNA

Literature search

5 open access papers mention ccr-let-7j
(27 sentences)

Sequence

231413 reads, 857.0 reads per million, 33 experiments

cugcucuggguUGAGGUAGUUGUUUGUACAGUUuuuagggucuguuauucugcccuguuaaggaguuaaCUGUACAGACUACUGCCUUGCccagggu
..(((((((((.((((((((.((((((((((((..((((((..(.....).))))))..........)))))))))))).)))))))))))))))))

Structure

cu         U        U            --------uu      cu u 
  gcucugggu GAGGUAGU GUUUGUACAGUU          uagggu  g u
  ||||||||| |||||||| ||||||||||||          ||||||  | a
  ugggaccCG UUCCGUCA CAGACAUGUCaa          gucccg  c u
--         -        U            uugaggaauu      -u u 

Annotation confidence High

Genome context

Unknown

Mature ccr-let-7j-5p

• Accession: MIMAT0026193
• Description: Cyprinus carpio ccr-let-7j-5p mature miRNA
• Sequence: 12 - UGAGGUAGUUGUUUGUACAGUU - 33
• Evidence: experimental ; Illumina [1]

Mature ccr-let-7j-3p

• Accession: MIMAT0058253
• Description: Cyprinus carpio ccr-let-7j-3p mature miRNA
• Sequence: 70 - CUGUACAGACUACUGCCUUGC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925