Stem-loop mdm-MIR1511

Accession

MI0023292

Description

Malus domestica mdm-MIR1511 precursor miRNA

Literature search

3 open access papers mention mdm-MIR1511
(7 sentences)

Sequence

374031 reads, 22636.0 reads per million, 31 experiments

gugggucuaguucucauuccauugUGGUAUCAGGACUAUGUUAUGugaauguuguuacacaauauuguguuacucaucuguauaACCUAGCUCUGAUACCAUGAAcaaaauuaaaucuacgacccau
((((((((((...........(((((((((((((.(((.((((((...(((..((.(((((....))))).)).)))...)))))).))).)))))))))))))............))).)))))))

Structure

       -   -uucucauucca             A   U      uga   uu  u     a 
guggguc uag            uugUGGUAUCAGG CUA GUUAUG   aug  gu acaca u
||||||| |||            ||||||||||||| ||| ||||||   |||  || |||||  
uacccag auc            AGUACCAUAGUCU GAU CAauau   uac  ca ugugu a
       c   uaaauuaaaacA             C   C      guc   -u  u     u 

Annotation confidence High

Genome context

MDC009780.211: 2054-2180 [-]

Mature mdm-miR1511-5p

• Accession: MIMAT0056737
• Description: Malus domestica mdm-miR1511-5p mature miRNA
• Sequence: 25 - UGGUAUCAGGACUAUGUUAUG - 45
• Evidence: experimental ; unknown

Mature mdm-miR1511-3p

• Accession: MIMAT0026188
• Description: Malus domestica mdm-miR1511-3p mature miRNA
• Sequence: 85 - ACCUAGCUCUGAUACCAUGAA - 105
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47